Welcome to pyPheWAS’s documentation!

The pyPhewas module is used to execute a variety of different analyses on large sets of patient phenotype data.

Features

• Data cleaning and preparation
• Run logarithmic regressions on patient data
• Plot results

Installation

Install pyPhewas through pip by running:

pip install pyPhewas

Online

• Issue Tracker: github.com/BennettLandman/pyPheWAS/issues
• Source Code: github.com/BennettLandman/pyPheWAS

Support

If you are having issues, please let us know! Email me at:

firstname.lastname@vanderbilt.edu, where firstname=shikha and lastname=chaganti

License

This project is licensed under the MIT license.

Contents

• Tutorial
  • Research Tools
  • Additional Research Tools
• Source Documentation
  • pyPheWAS – Root package
  • pyPheWAS.pyPhewasv2 – pyPhewas functions file
  • pyPheWAS.pyPhewasCore – pyPhewas Research Tools file

Indices and tables

• Index
• Search Page
• Module Index